miRBase entry: zma-MIR319b

Stem-loop zma-MIR319b


Accession
MI0001815
Description
Zea mays zma-MIR319b precursor miRNA
Gene family
MIPF0000010; MIR159

Literature search
21 open access papers mention zma-MIR319b
(76 sentences)

Sequence

2110 reads, 13480 reads per million, 120 experiments
gacgacgauggcuggauggaagAGAGCGUCCUUCAGUCCACUCaggggcggugcuagggucgaauuagcugccgacucauucacccacaugccaagcaaacggccauggaaaccagcuuugcagaugagugaaugaagcgggagguaaaagcuucgaucucgcaccgucuuugcUUGGACUGAAGGGUGCUCCCuccucccucgcuccuuguu
...(((((.(((.(((.(((.(.(((((((((((((((((..((((((((((((..(((((((((((.((.(((..((((((((.((..(((.((((.........(((...))))))).)))..)).))))))))..))).)).)))....)))))))).))))))))))))..)))))))))))))))))).))))))...)))..)))))

Structure
gac     -u   --u   u   a A                 CU            ua        ----   g  g   ac        c  ca   c    aaacggcca   a 
   gacga  ggc   gga gga g GAGCGUCCUUCAGUCCA  Caggggcggugc  gggucgaa    uua cu ccg  ucauucac ca  ugc aagc         ugg  
   |||||  |||   ||| ||| | |||||||||||||||||  ||||||||||||  ||||||||    ||| || |||  |||||||| ||  ||| ||||         ||| a
   uuguu  ucg   ccu ccu C CUCGUGGGAAGUCAGGU  guuucugccacg  ucuagcuu    aau ga ggc  aguaagug gu  acg uucg         acc  
---     cc   cuc   -   C -                 Uc            -c        cgaa   g  g   ga        a  ag   u    ---------   a 


Annotation confidence High
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Genome context
chr3: 2038966-2039178 [+]

Database links

Mature zma-miR319b-5p

Accession MIMAT0015182
Description Zea mays zma-miR319b-5p mature miRNA
Sequence 23 - AGAGCGUCCUUCAGUCCACUC - 43
Evidence experimental
Illumina [2]

Mature zma-miR319b-3p

Accession MIMAT0001717
Description Zea mays zma-miR319b-3p mature miRNA
Sequence 175 - UUGGACUGAAGGGUGCUCCC - 194
Evidence experimental
Illumina [2]
Database links

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716

  2. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13