Stem-loop zma-MIR166k

Accession

MI0001817

Description

Zea mays zma-MIR166k precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

33 open access papers mention zma-MIR166k
(192 sentences)

Sequence

19253 reads, 67163 reads per million, 12 experiments

gcaugcucggguuaggucagggGGAUUGUUGUCUGGCUCGGGGucuccggucgagaucgauucauaacauauacguacgugcuucuagccuugccggcggagcuagucguugucgucgaccggagauuUCGGACCAGGCUUCAAUCCCUuugaccaugcggcauuagg
..((((.((.((..((((((((((((((..((((((.(((((((((((((((((...((((...........(((.((..(((((..(((.....))))))))..))))).))))))))))))))))))))).))))))..)))))))))))))))).))))))....

Structure

--gc    u  g  ua              UU      C                 gau    ucauaacauau   u  gu     ua   u 
    augc cg gu  ggucagggGGAUUG  GUCUGG UCGGGGucuccggucga   cgau           acg ac  gcuuc  gcc u
    |||| || ||  ||||||||||||||  |||||| |||||||||||||||||   ||||           ||| ||  |||||  ||| g
    uacg gc ua  ccaguuUCCCUAAC  CGGACC GGCUuuagaggccagcu   gcug           ugc ug  cgagg  cgg c
ggau    -  g  --              UU      A                 ---    ----------u   -  au     --   c 

Annotation confidence High

Genome context

chr5: 216483766-216483933 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from zma-MIR166k

Mature zma-miR166k-5p

• Accession: MIMAT0015184
• Description: Zea mays zma-miR166k-5p mature miRNA
• Sequence: 23 - GGAUUGUUGUCUGGCUCGGGG - 43
• Evidence: experimental ; Illumina [2]

Mature zma-miR166k-3p

• Accession: MIMAT0001719
• Description: Zea mays zma-miR166k-3p mature miRNA
• Sequence: 129 - UCGGACCAGGCUUCAAUCCCU - 149
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13