miRBase entry: zma-MIR166j

Stem-loop zma-MIR166j


Accession
MI0001818
Description
Zea mays zma-MIR166j precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
32 open access papers mention zma-MIR166j
(189 sentences)

Sequence

19161 reads, 68413 reads per million, 9 experiments
caaguugaagauuagguuaaggGGUUUGUUUGUCUGGUUCAAGGucgccacacagcagggaaaacccauuucgccuugaagcaugcaccaugauggguguaccuguuggugaucUCGGACCAGGCUUCAAUCCCUuuaacuagcgucugcauau
.....((.((((..((((((((((.(((...(((((((((.(((((((((....(((((....(((((((..((..((...)).)).....)))))))...)))))))))))))).)))))))))..))).))))))))))...)))).))...

Structure
caagu  a    -ua          U   UUU         A         caca     gaaa       ---uc  cu  a 
     ug agau   gguuaaggGG UUG   GUCUGGUUC AGGucgcca    gcagg    acccauu     gc  ug  
     || ||||   |||||||||| |||   ||||||||| |||||||||    |||||    |||||||     ||  || a
     ac ucug   ucaauuUCCC AAC   CGGACCAGG Ucuaguggu    ugucc    uggguag     cg  ac  
--uau  g    cga          U   -UU         C         ----     -aug       uacca  -u  g 


Annotation confidence High
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Genome context
chr7: 128589394-128589547 [+]

Database links

Mature zma-miR166j-5p

Accession MIMAT0015185
Description Zea mays zma-miR166j-5p mature miRNA
Sequence 23 - GGUUUGUUUGUCUGGUUCAAGG - 44
Evidence experimental
Illumina [2]

Mature zma-miR166j-3p

Accession MIMAT0001720
Description Zea mays zma-miR166j-3p mature miRNA
Sequence 115 - UCGGACCAGGCUUCAAUCCCU - 135
Evidence experimental
Illumina [2]
Database links

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716

  2. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13