miRBase entry: zma-MIR167f

Stem-loop zma-MIR167f


Accession
MI0001820
Description
Zea mays zma-MIR167f precursor miRNA
Gene family
MIPF0000023; MIR167_1

Literature search
30 open access papers mention zma-MIR167f
(125 sentences)

Sequence

22838 reads, 48626 reads per million, 16 experiments
cgugcaccuuauuaagcagcUGAAGCUGCCAGCAUGAUCUGaucuuucguuuacuggcaacuuuggauaccuaagauccaGAUCGUGCUGCGCAGUUUCACCugcuaauuggagcacag
.((((.((..((((.((((.((((((((((((((((((((((((((..(((((..(....)..)))))....))))).)))))))))))).))))))))).)))))))).)).))))..

Structure
-c    a  uu    a    c         -            -     --uc     cu g 
  gugc cc  auua gcag UGAAGCUGC CAGCAUGAUCUG aucuu    guuua  g c
  |||| ||  |||| |||| ||||||||| |||||||||||| |||||    |||||  |  
  cacg gg  uaau cguC ACUUUGACG GUCGUGCUAGac uagaa    uaggu  c a
ga    a  -u    -    C         C            c     ucca     uu a 


Annotation confidence Not enough data
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Genome context
chr3: 195044719-195044837 [+]

Database links

Mature zma-miR167f-5p

Accession MIMAT0001722
Description Zea mays zma-miR167f-5p mature miRNA
Sequence 21 - UGAAGCUGCCAGCAUGAUCUG - 41
Evidence experimental
Illumina [2]
Database links

Mature zma-miR167f-3p

Accession MIMAT0015187
Description Zea mays zma-miR167f-3p mature miRNA
Sequence 81 - GAUCGUGCUGCGCAGUUUCACC - 102
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716

  2. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13