Stem-loop zma-MIR167i

Accession

MI0001823

Description

Zea mays zma-MIR167i precursor miRNA

Gene family

MIPF0000023; MIR167_1

Literature search

30 open access papers mention zma-MIR167i
(125 sentences)

Sequence

26031 reads, 55558 reads per million, 29 experiments

acuucgcuggugugagagcuUGAAGCUGCCAGCAUGAUCUGgcurcucaaacgccgccggccucccaagugcucgaucgguggcgcuucaccaGAUCAUGUUGCAGCUUCACucucucgcaaccagcgaa
...(((((((((((((((..(((((((((.((((((((((((.........((((((((((((....)).)).....)))))))).....)))))))))))))))))))))..))))))).)))))))).

Structure

acu        -       cu         C            curcucaaa        -----  -  c 
   ucgcuggu gugagag  UGAAGCUGC AGCAUGAUCUGg         cgccgccg     gc cu c
   |||||||| |||||||  ||||||||| ||||||||||||         ||||||||     || ||  
   agcgacca cgcucuc  ACUUCGACG UUGUACUAGacc         gcgguggc     cg ga c
--a        a       uC         -            ----acuuc        uagcu  u  a 

Annotation confidence High

Genome context

chr9: 113476123-113476252 [+]

Mature zma-miR167i-5p

• Accession: MIMAT0001725
• Description: Zea mays zma-miR167i-5p mature miRNA
• Sequence: 21 - UGAAGCUGCCAGCAUGAUCUG - 41
• Evidence: experimental ; Illumina [2]

Mature zma-miR167i-3p

• Accession: MIMAT0015190
• Description: Zea mays zma-miR167i-3p mature miRNA
• Sequence: 94 - GAUCAUGUUGCAGCUUCAC - 112
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13