Stem-loop zma-MIR168a

Accession

MI0001824

Description

Zea mays zma-MIR168a precursor miRNA

Gene family

MIPF0000081; MIR168

Literature search

34 open access papers mention zma-MIR168a
(169 sentences)

Sequence

66181 reads, 151808 reads per million, 162 experiments

gaagccgcgccgccucgggcUCGCUUGGUGCAGAUCGGGACccgccgcccggccgacgggacggauCCCGCCUUGCACCAAGUGAAucggagccggcggagcga
...((..(((((.(((.((.(((((((((((((..(((((.(((...((((.....)))).))).)))))..))))))))))))).)).))).)))))..))..

Structure

gaa  cg     c   g  c             AU     C   ccg    g 
   gc  cgccg cuc gg UCGCUUGGUGCAG  CGGGA ccg   cccg c
   ||  ||||| ||| || |||||||||||||  ||||| |||   |||| c
   cg  gcggc gag cu AGUGAACCACGUU  GCCCu ggc   gggc g
-ag  ag     c   g  A             CC     a   --a    a 

Annotation confidence Low

Genome context

chr5: 76534928-76535031 [-]

Mature zma-miR168a-5p

• Accession: MIMAT0001726
• Description: Zea mays zma-miR168a-5p mature miRNA
• Sequence: 21 - UCGCUUGGUGCAGAUCGGGAC - 41
• Evidence: experimental ; Illumina [3]

Mature zma-miR168a-3p

• Accession: MIMAT0015191
• Description: Zea mays zma-miR168a-3p mature miRNA
• Sequence: 67 - CCCGCCUUGCACCAAGUGAA - 86
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. PubMed ID: 15916721
   Identification and characterization of new plant microRNAs using EST analysis
   "Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA"
   "Cell Res (2005) 15:336-360


3. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13