Stem-loop zma-MIR169h

Accession

MI0001829

Description

Zea mays zma-MIR169h precursor miRNA

Gene family

MIPF0000012; MIR169_1

Literature search

31 open access papers mention zma-MIR169h
(218 sentences)

Sequence

303 reads, 1280 reads per million, 5 experiments

caauaagggccugccucugaUAGCCAAGGAUGACUUGCCUAuguccuuuguuuacaaaggaucagaauuguggaccuuuguguugguucguaggcagucuccuuggcuagccugaguggccccuauug
(((((.(((((...(((...((((((((((.((((.(((((((..((.....((((((((.(((......))).))))))))..))..)))))))))))))))))))))....))).))))).)))))

Structure

     a     ugc   -uga          U    U       uc  uuguu        a   ga 
caaua gggcc   cuc    UAGCCAAGGA GACU GCCUAug  cu     uacaaagg uca  a
||||| |||||   |||    |||||||||| |||| |||||||  ||     |||||||| |||   
guuau cccgg   gag    aucgguuccu cuga cggaugc  gg     guguuucc ggu  u
     c     --u   uccg          -    -       uu  ---uu        a   gu 

Annotation confidence Not enough data

Genome context

chr4: 49625355-49625482 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from zma-MIR169h

Mature zma-miR169h

• Accession: MIMAT0001731
• Description: Zea mays zma-miR169h mature miRNA
• Sequence: 21 - UAGCCAAGGAUGACUUGCCUA - 41
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13