Stem-loop sequence zma-MIR169h

Accession

MI0001829 (change log)

Description

Zea mays miR169h stem-loop

Gene family

MIPF0000012; MIR169_1

Literature search

31 open access papers mention zma-MIR169h
(217 sentences)

Stem-loop

        a     ugc   -uga          u    u       uc  uuguu        a   ga 
5' caaua gggcc   cuc    uagccaagga gacu gccuaug  cu     uacaaagg uca  a
   ||||| |||||   |||    |||||||||| |||| |||||||  ||     |||||||| |||   
3' guuau cccgg   gag    aucgguuccu cuga cggaugc  gg     guguuucc ggu  u
        c     --u   uccg          -    -       uu  ---uu        a   gu 

Deep sequencing

14684 reads, 1.16e+04 reads per million, 214 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (B73_RefGen_v4; GCA_000005005.6): chr4: 49625355-49625482 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from zma-MIR169h

• zma-MIR169h: chr4: 49625355-49625482 [+]
• zma-MIR169e: chr4: 49625356-49625483 [-]

Database links

• miRBase Tracker:MI0001829

Mature sequence zma-miR169h

• Accession: MIMAT0001731
• Sequence: 21 - uagccaaggaugacuugccua - 41
• Deep sequencing: 1509 reads, 136 experiments
• Evidence: by similarity; MI0001122

References

1. "Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).