miRBase entry: zma-MIR169i

Stem-loop zma-MIR169i


Accession
MI0001830
Description
Zea mays zma-MIR169i precursor miRNA
Gene family
MIPF0000012; MIR169_1

Literature search
31 open access papers mention zma-MIR169i
(242 sentences)

Sequence

304 reads, 2459 reads per million, 8 experiments
gaugagagugguagcucuggUAGCCAAGGAUGACUUGCCUGugugcuggccacgcuccccucaugcaaggaccaucucgugucgaccgacgagcgagcgagcgaucgaucgaugagaggaugacgaagcuugggguguacguuggucucucacgGGCAGUCUCCUUGGCUAGcccugacucacucuuaccg
(.((((((((..((.((.((((((((((((.((((.(((((((.(..(((((((..(.(((((.((......((((((.((((((.(((...((......))..))).)))))).)).)))).....)).))))).)..)).))))).).)))))))))))))))))))).)))..)))))))))))).).

Structure
- a        gu  c  -u   -         U    U       u cu     -  cu c     u  aaggac    -  g      c   cga  ga 
 g ugagagug  ag uc  ggU AGCCAAGGA GACU GCCUGug g  ggcca cg  c ccuca gc      cauc uc ugucga cga   gc  g
 | ||||||||  || ||  ||| ||||||||| |||| ||||||| |  ||||| ||  | ||||| ||      |||| || |||||| |||   ||   
 c auucucac  uc ag  ccG UCGGUUCCU CUGA CGGgcac c  cuggu gc  g ggggu cg      guag ag guagcu gcu   cg  c
g c        --  -  uc   A         -    -       u -u     u  au u     u  -aagca    g  a      a   -ag  ag 


Annotation confidence Not enough data
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Genome context
chr4: 49299338-49299528 [+]

Database links

Mature zma-miR169i-5p

Accession MIMAT0001732
Description Zea mays zma-miR169i-5p mature miRNA
Sequence 21 - UAGCCAAGGAUGACUUGCCUG - 41
Evidence experimental
Illumina [2]
Database links

Mature zma-miR169i-3p

Accession MIMAT0015195
Description Zea mays zma-miR169i-3p mature miRNA
Sequence 155 - GGCAGUCUCCUUGGCUAG - 172
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716

  2. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13