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miRBase |
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Stem-loop sequence zma-MIR169k |
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Accession | MI0001831 (change log) | ||||
Description | Zea mays miR169k stem-loop | ||||
Gene family | MIPF0000012; MIR169_1 | ||||
Literature search |
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31 open access papers mention zma-MIR169k | ||||
Stem-loop |
-c acu u - u u gc uc - guc cg 5' gaugagagc gcuc ggu agccaagga gacu gccugug c ca uca gcagagga c ||||||||| |||| ||| ||||||||| |||| ||||||| | || ||| |||||||| 3' cuacucucg cgag ccg ucgguuccu cuga cggacgc g gu ggu cgucuucu u ac --g c a - - ua cu u guu ug |
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Deep sequencing |
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Confidence |
Annotation confidence: not enough data
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Genome context |
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Database links |
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Mature sequence zma-miR169k-5p |
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Accession | MIMAT0001733 |
Previous IDs | zma-miR169k |
Sequence |
21 - uagccaaggaugacuugccug - 41 |
Deep sequencing | 2725 reads, 178 experiments |
Evidence | experimental; Illumina [2] |
Mature sequence zma-miR169k-3p |
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Accession | MIMAT0015196 |
Previous IDs | zma-miR169k* |
Sequence |
97 - ggcagucuccuuggcuag - 114 |
Deep sequencing | 2068 reads, 190 experiments |
Evidence | experimental; Illumina [2] |
References |
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1 |
"Conservation and divergence of microRNA families in plants"
http://genomebiology.com/2005/6/11/p13 (2005).
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2 |
PMID:19936050
"A genome-wide characterization of microRNA genes in maize"
PLoS Genet. 5:e1000716(2009).
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