miRBase entry: zma-MIR169j

Stem-loop zma-MIR169j


Accession
MI0001832
Description
Zea mays zma-MIR169j precursor miRNA
Gene family
MIPF0000012; MIR169_1

Literature search
31 open access papers mention zma-MIR169j
(218 sentences)

Sequence

2330 reads, 2595 reads per million, 170 experiments
gcgauaagagucuguccagaUAGCCAAGGAUGACUUGCCUGuggcuucuuggcuuggcuuggcucgggcaaaaccuugugcacguuuuauugcucgccucguggccucgaucacaGGCAGUCUCCUUGGCUAGuccgggcgggccccuuau
...(((((.((((((((.((((((((((((.((((.((((((((..((..((((..((..(((..(((((((((.........)))...)))))))))..))))))..))))))))))))))))))))))).))).))))))))..)))))

Structure
gcg     -a        a   -         U    U        cu  uu    ug  uu   uc      ---   cuu 
   auaag  gucugucc gaU AGCCAAGGA GACU GCCUGugg  uc  ggcu  gc  ggc  gggcaa   aac   g
   |||||  |||||||| ||| ||||||||| |||| ||||||||  ||  ||||  ||  |||  ||||||   |||   u
   uauuc  cgggcggg cuG UCGGUUCCU CUGA CGGacacu  ag  ccgg  ug  ccg  cucguu   uug   g
---     cc        c   A         -    -        --  cu    --  cu   --      auu   cac 


Annotation confidence High
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Genome context
chr2: 198435908-198436058 [+]

Database links

Mature zma-miR169j-5p

Accession MIMAT0001734
Description Zea mays zma-miR169j-5p mature miRNA
Sequence 21 - UAGCCAAGGAUGACUUGCCUG - 41
Evidence experimental
Illumina [2]

Mature zma-miR169j-3p

Accession MIMAT0015197
Description Zea mays zma-miR169j-3p mature miRNA
Sequence 116 - GGCAGUCUCCUUGGCUAG - 133
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716

  2. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13