miRBase entry: zma-MIR169e

Stem-loop zma-MIR169e


Accession
MI0001834
Description
Zea mays zma-MIR169e precursor miRNA
Gene family
MIPF0000323; MIR169_4

Literature search
30 open access papers mention zma-MIR169e
(226 sentences)

Sequence

303 reads, 444 reads per million, 5 experiments
gcaauaggggccacucaggcUAGCCAAGGAGACUGCCUACGaaccaacacaaagguccacaauucugauccuuuguaaacaaaggacauaggcaagucauccuuggcuaucagaggcaggcccuuauu
..((((((((((.(((.((.(((((((((((((((((((.(.(((........))).).......((.(((((((....)))))))))))))).)))).)))))))))))).)))...))))))))))

Structure
gc          --a   a  c          -    -     -----------------------------C a   aac 
  aauaggggcc   cuc gg UAGCCAAGGA GACU GCCUA                              G acc   a
  ||||||||||   ||| || |||||||||| |||| |||||                              | |||    
  uuauucccgg   gag cu aucgguuccu cuga cggau                              c ugg   c
--          acg   a  -          a    a     acaggaaacaaauguuuccuagucuuaaca c   aaa 


Annotation confidence Not enough data
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Genome context
chr4: 49625356-49625483 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from zma-MIR169e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature zma-miR169e

Accession MIMAT0001736
Description Zea mays zma-miR169e mature miRNA
Sequence 21 - UAGCCAAGGAGACUGCCUACG - 41
Evidence not_experimental

References

  1. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13