Stem-loop zma-MIR171e

Accession

MI0001837

Description

Zea mays zma-MIR171e precursor miRNA

Gene family

MIPF0000030; MIR171_1

Literature search

19 open access papers mention zma-MIR171e
(58 sentences)

Sequence

1855 reads, 4498 reads per million, 110 experiments

agaaauggaauaguagcuaugaUGUUGGCUCGGCUCACUCAGAcgacguacgcgcgcgagaucaugugcuaugccgcugcuguuucUGAUUGAGCCGUGCCAAUAUCuuaguacucuuccaugcau
....((((((.((((.(((.(((((((((.(((((((.(((((.((((((.(((.(((((........)).))))))))).)))))))).))))))).))))))))).))))))).))))))....

Structure

agaa      u    g   u         U       C     c   -   c   c   -  auc 
    auggaa agua cua gaUGUUGGC CGGCUCA UCAGA gac gua gcg gcg ag   a
    |||||| |||| ||| ||||||||| ||||||| ||||| ||| ||| ||| ||| ||    
    uaccuu ucau gau CUAUAACCG GCCGAGU AGUcu uug cgu cgc cgu uc   u
uacg      c    -   u         U       U     -   u   -   -   a  gug 

Annotation confidence High

Genome context

chr1: 7976712-7976837 [+]

Mature zma-miR171e-5p

• Accession: MIMAT0015200
• Description: Zea mays zma-miR171e-5p mature miRNA
• Sequence: 23 - UGUUGGCUCGGCUCACUCAGA - 43
• Evidence: experimental ; Illumina [2]

Mature zma-miR171e-3p

• Accession: MIMAT0001739
• Description: Zea mays zma-miR171e-3p mature miRNA
• Sequence: 87 - UGAUUGAGCCGUGCCAAUAUC - 107
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13