miRBase entry: zma-MIR171h

Stem-loop zma-MIR171h


Accession
MI0001844
Description
Zea mays zma-MIR171h precursor miRNA
Gene family
MIPF0000104; MIR171_2

Literature search
20 open access papers mention zma-MIR171h
(52 sentences)

Sequence

63 reads, 270 reads per million, 6 experiments
gggaggaaggagacgacauggcgUGGUAUUGUUUCGGCUCAUGUccuucuucgaucgagucuugccguuggauuuggaugugauGUGAGCCGAACCAAUAUCACUcauguacucuucauuccca
(((((..(((((...((((((.(((((((((.((((((((((((((.(((..((((.((........)).)))).))).).))))))))))))).))))))))))))))).)))))..))))).

Structure
-     ga     acg      c         U             - u   uc    g  ucu 
 gggag  aggag   acaugg gUGGUAUUG UUCGGCUCAUGUc c ucu  gauc ag   u
 |||||  |||||   |||||| ||||||||| ||||||||||||| | |||  |||| ||    
 cccuu  uucuc   uguacU CACUAUAAC AAGCCGAGUGuag g agg  uuag uu   g
a     ac     --a      -         C             u u   -u    g  gcc 


Annotation confidence Not enough data
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Genome context
chr2: 18027100-18027223 [-]

Database links

Mature zma-miR171h-5p

Accession MIMAT0015206
Description Zea mays zma-miR171h-5p mature miRNA
Sequence 24 - UGGUAUUGUUUCGGCUCAUGU - 44
Evidence experimental
Illumina [2]
Database links

Mature zma-miR171h-3p

Accession MIMAT0001746
Description Zea mays zma-miR171h-3p mature miRNA
Sequence 85 - GUGAGCCGAACCAAUAUCACU - 105
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716

  2. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13