Stem-loop zma-MIR171h

Accession

MI0001844

Description

Zea mays zma-MIR171h precursor miRNA

Literature search

20 open access papers mention zma-MIR171h
(52 sentences)

Sequence

61 reads, 86 reads per million, 4 experiments

gggaggaaggagacgacauggcgUGGUAUUGUUUCGGCUCAUGUccuucuucgaucgagucuugccguuggauuuggaugugauGUGAGCCGAACCAAUAUCACUcauguacucuucauuccca
(((((..(((((...((((((.(((((((((.((((((((((((((.(((..((((.((........)).)))).))).).))))))))))))).))))))))))))))).)))))..))))).

Structure

-     ga     acg      c         U             - u   uc    g  ucu 
 gggag  aggag   acaugg gUGGUAUUG UUCGGCUCAUGUc c ucu  gauc ag   u
 |||||  |||||   |||||| ||||||||| ||||||||||||| | |||  |||| ||    
 cccuu  uucuc   uguacU CACUAUAAC AAGCCGAGUGuag g agg  uuag uu   g
a     ac     --a      -         C             u u   -u    g  gcc 

Annotation confidence Low

Genome context

chr2: 18027100-18027223 [-]

Mature zma-miR171h-5p

• Accession: MIMAT0015206
• Description: Zea mays zma-miR171h-5p mature miRNA
• Sequence: 24 - UGGUAUUGUUUCGGCUCAUGU - 44
• Evidence: experimental ; Illumina [2]

Mature zma-miR171h-3p

• Accession: MIMAT0001746
• Description: Zea mays zma-miR171h-3p mature miRNA
• Sequence: 85 - GUGAGCCGAACCAAUAUCACU - 105
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13