Stem-loop zma-MIR408a

Accession

MI0001846

Description

Zea mays zma-MIR408a precursor miRNA

Literature search

21 open access papers mention zma-MIR408a
(128 sentences)

Sequence

1332 reads, 2572.0 reads per million, 85 experiments

gggguugguuuugauuugGAGACAGGGAUGAGACAGAGCAUGGgauggggccaucaacaaaguggagggacuagcuugcgaggcagaaagaaggugccagugccggugccuccccggugaaacgaugaugggaguguuguugcucccucccCUGCACUGCCUCUUCCCUGGCuccgaucccccaccguugc
((((........((((.((((.((((((.(((.(((.(((.((((.(((((...(((((....(((((.(((.((..((..((((.........)))).)))).))).)))))((.((.(.....).)).))..)))))..))))).)))).))).))).))).)))))).))))))))))))........

Structure

--------    uugguuuu    u    A      U   A   A   U    u     cau     -----------------aagu     g   a  uu  ga    gaa 
        gggg        gauu gGAG CAGGGA GAG CAG GCA GGga ggggc   caaca                     ggagg acu gc  gc  ggca   a
        ||||        |||| |||| |||||| ||| ||| ||| |||| |||||   |||||                     ||||| ||| ||  ||  ||||   g
        cccc        cuag ccuC GUCCCU CUC GUC CGU cccu ccucg   guugu                     ccucc ugg cg  ug  ccgu   a
cguugcca    --------    -    G      U   C   A   C    c     -uu     gaggguaguagcaaaguggcc     g   c  --  -a    gga 

Annotation confidence Low

Genome context

3: 58672028-58672218 [-]

Mature zma-miR408a-5p

• Accession: MIMAT0056567
• Description: Zea mays zma-miR408a-5p mature miRNA
• Sequence: 19 - GAGACAGGGAUGAGACAGAGCAUGG - 43
• Evidence: experimental ; unknown

Mature zma-miR408a-3p

• Accession: MIMAT0001748
• Description: Zea mays zma-miR408a-3p mature miRNA
• Sequence: 152 - CUGCACUGCCUCUUCCCUGGC - 172
• Evidence: not_experimental

References

1. PubMed ID: 15916721
   Identification and characterization of new plant microRNAs using EST analysis
   "Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA"
   "Cell Res (2005) 15:336-360


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13