miRBase entry: sbi-MIR395f

Stem-loop sbi-MIR395f


Accession
MI0001855
Description
Sorghum bicolor sbi-MIR395f precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
5 open access papers mention sbi-MIR395f
(34 sentences)

Sequence

acaauguuugguguuaccacgaguucccuucaagcacuucaugaggcaccauuaaauaacucuauuuaagauuagguguaauAUGAAGUGUUUGGGGGAACUCuuggugauacucaacaucg
...(((((.((((((((((.(((((((((.((((((((((((...(((((.(((((((....))))))).....)))))...))))))))))))))))))))).)))))))))).)))))..

Structure
aca     u          c         u            gag     ----a       a 
   auguu gguguuacca gaguucccu caagcacuucau   gcacc     uuaaaua c
   ||||| |||||||||| ||||||||| ||||||||||||   |||||     |||||||  
   uacaa ucauaguggu CUCAAGGGG GUUUGUGAAGUA   ugugg     aauuuau u
-gc     c          u         -            uaa     auuag       c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr6: 57228009-57228130 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from sbi-MIR395f
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sbi-miR395f

Accession MIMAT0001757
Description Sorghum bicolor sbi-miR395f mature miRNA
Sequence 83 - AUGAAGUGUUUGGGGGAACUC - 103
Evidence not_experimental

References

  1. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13