Stem-loop sequence dre-let-7a-1

AccessionMI0001857 (change log)
DescriptionDanio rerio let-7a-1 stem-loop
Gene family MIPF0000002; let-7
Literature search

43 open access papers mention dre-let-7a-1
(322 sentences)

Stem-loop
      gg     u   gu                uuagg   aca   a 
5' gac  uggga gag  aguagguuguauaguu     guc   ccc c
   |||  ||||| |||  ||||||||||||||||     |||   ||| a
3' cug  acucu uuc  ucauccaacauaucaa     uag   ggg c
      aa     -   ug                -----   --a   u 
Get sequence
Deep sequencing
310369 reads, 2.11e+04 reads per million, 11 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (GRCz11; GCA_000002035.4) Overlapping transcripts
chr11: 27503232-27503320 [-]
intergenic
Clustered miRNAs
< 10kb from dre-let-7a-1
dre-let-7a-1chr11: 27503232-27503320 [-]
dre-let-7fchr11: 27503017-27503132 [-]
Database links

Mature sequence dre-let-7a

Accession MIMAT0001759
Sequence

11 - 

ugagguaguagguuguauaguu

 - 32

Get sequence
Deep sequencing1860970 reads, 11 experiments
Evidence experimental; cloned [1]
Database links
Predicted targets

References

1
PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).