Stem-loop sequence dre-let-7h

Accession

MI0001875 (change log)

Description

Danio rerio let-7h stem-loop

Gene family

MIPF0000002; let-7

Literature search

39 open access papers mention dre-let-7h
(197 sentences)

Stem-loop

   --    ugg           u                 u      -------    a   gua 
5'   gagu   cuguguugugg gagguaguaaguugugu guuguu       gggg uca   u
     ||||   ||||||||||| ||||||||||||||||| ||||||       |||| |||    
3'   cuca   gacguaauacc uuccgucauuuaacaua caauag       uccc ggu   a
   cu    ---           -                 u      aggaagu    -   aug 

Deep sequencing

22415 reads, 1.83e+03 reads per million, 11 experiments

Confidence

Annotation confidence: not enough data

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Genome context

Coordinates (GRCz11; GCA_000002035.4)	Overlapping transcripts
chr23: 28536665-28536778 [+]	sense OTTDART00000038190 ; huwe1-001; intron 56 ENSDART00000146990 ; huwe1-001; intron 56 ENSDART00000006657 ; huwe1-201; intron 57
KZ115692.1: 496946-497059 [+]	sense OTTDART00000038190 ; huwe1-001; intron 56 ENSDART00000146990 ; huwe1-001; intron 56 ENSDART00000006657 ; huwe1-201; intron 57

Clustered miRNAs

< 10kb from dre-let-7h

• dre-let-7g-2: chr23: 28536361-28536457 [+]
• dre-let-7h: chr23: 28536665-28536778 [+]

Database links

• EntrezGene:mirlet7h
• EntrezGene:mirlet7h
• RNAcentral:URS000075BD4E_7955
• miRBase Tracker:MI0001875

Mature sequence dre-let-7h

• Accession: MIMAT0001766
• Sequence: 19 - ugagguaguaaguuguguuguu - 40
• Deep sequencing: 22225 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000075BD78_7955
• Predicted targets:
  • TargetScanFish:dre-let-7h

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).