Stem-loop dre-mir-1-2

Accession

MI0001877

Description

Danio rerio dre-mir-1-2 precursor miRNA

Gene family

MIPF0000038; mir-1

Literature search

37 open access papers mention dre-mir-1-2
(193 sentences)

Sequence

86811 reads, 3697 reads per million, 9 experiments

gccuacuugguguacauacuucuuuaugugcccauaugaacauauaaaagcuaUGGAAUGUAAAGAAGUAUGUAUucuuggucaggu
(((((((.((.((((((((((((((((((..(((((...............))))).)))))))))))))))))).)).))).))))

Structure

    -   u  u                  gc     ugaaca 
gccu acu gg guacauacuucuuuaugu  ccaua      u
|||| ||| || ||||||||||||||||||  |||||      a
ugga ugg uc UAUGUAUGAAGAAAUGUA  GGUau      u
    c   u  u                  -A     cgaaaa 

Annotation confidence Not enough data

Genome context

chr2: 4116314-4116400 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-1-2

Mature dre-miR-1

• Accession: MIMAT0001768
• Description: Danio rerio dre-miR-1 mature miRNA
• Sequence: 54 - UGGAAUGUAAAGAAGUAUGUAU - 75
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293