Stem-loop dre-mir-1-1

Accession

MI0001878

Description

Danio rerio dre-mir-1-1 precursor miRNA

Gene family

MIPF0000038; mir-1

Literature search

36 open access papers mention dre-mir-1-1
(190 sentences)

Sequence

85747 reads, 3659 reads per million, 9 experiments

gcccauauaucccgcuugguagacauacuucuuuauaugcccauaugaacaagagcagcuaUGGAAUGUAAAGAAGUAUGUAUcccaggugagagaaaaacggggc
((((.....((.(((((((...((((((((((((((((..(((((((........))..))))).))))))))))))))))...))))))).))........))))

Structure

    ---auaua  c       uag                gc     --  aac 
gccc        uc cgcuugg   acauacuucuuuauau  ccaua  ug   a
||||        || |||||||   ||||||||||||||||  |||||  ||    
cggg        ag guggacc   UGUAUGAAGAAAUGUA  GGUau  ac   a
    gcaaaaag  a       cUA                -A     cg  gag 

Annotation confidence Not enough data

Genome context

chr23: 7210157-7210262 [-]

Mature dre-miR-1

• Accession: MIMAT0001768
• Description: Danio rerio dre-miR-1 mature miRNA
• Sequence: 62 - UGGAAUGUAAAGAAGUAUGUAU - 83
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293