Stem-loop sequence dre-mir-7a-3

Accession

MI0001879 (change log)

Description

Danio rerio miR-7a-3 stem-loop

Gene family

MIPF0000022; mir-7

Literature search

13 open access papers mention dre-mir-7a-3
(102 sentences)

Stem-loop

   ugugug          ---------    -   g   u   a    a   au        gaaaauga 
5'       uguguucugc         ccuc ugc gag gga gacu gug  uuuguugu        a
         ||||||||||         |||| ||| ||| ||| |||| |||  ||||||||         
3'       acacgagacg         gggg acg cuc ccu cuga cgc  aaacaaca        c
   ------          uccacaccc    c   a   u   g    -   -c        accaaaaa 

Deep sequencing

3550 reads, 118 reads per million, 11 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr8: 10205-10324 [+]
• Overlapping transcripts:

  sense

  ENSDART00000017718 ; fem1c-201; intron 3

Database links

• EntrezGene:mir7a-3
• EntrezGene:mir7a-3
• RNAcentral:URS0000759D02_7955
• miRBase Tracker:MI0001879

Mature sequence dre-miR-7a

• Accession: MIMAT0001266
• Previous IDs: dre-miR-7
• Sequence: 28 - uggaagacuagugauuuuguugu - 50
• Deep sequencing: 10824 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS0000591950_7955
• Predicted targets:
  • TargetScanFish:dre-miR-7a

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).