Stem-loop dre-mir-9-1

Accession

MI0001880

Description

Danio rerio dre-mir-9-1 precursor miRNA

Gene family

MIPF0000014; mir-9

Literature search

22 open access papers mention dre-mir-9-1
(221 sentences)

Sequence

41394 reads, 2172 reads per million, 11 experiments

gggguuggcuguuaUCUUUGGUUAUCUAGCUGUAUGAguguuauucauucuucaUAAAGCUAGAUAACCGAAAGUaacaagaauccc
((((((...((((((.(((((((((((((((.((((((((.....)))...))))).))))))))))))))).))))))..))))))

Structure

      ggc      C               G     ---   u 
gggguu   uguuaU UUUGGUUAUCUAGCU UAUGA   gug u
||||||   |||||| ||||||||||||||| |||||   ||| a
cccuaa   acaaUG AAGCCAAUAGAUCGA AUacu   uac u
      -ga      A               A     ucu   u 

Annotation confidence High

Genome context

chr16: 29216274-29216360 [+]

Mature dre-miR-9-5p

• Accession: MIMAT0001769
• Description: Danio rerio dre-miR-9-5p mature miRNA
• Sequence: 15 - UCUUUGGUUAUCUAGCUGUAUGA - 37
• Evidence: experimental ; cloned [1]

Mature dre-miR-9-3p

• Accession: MIMAT0003156
• Description: Danio rerio dre-miR-9-3p mature miRNA
• Sequence: 55 - UAAAGCUAGAUAACCGAAAGU - 75
• Evidence: experimental ; array [2], in-situ [2]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293


2. PubMed ID: 15919954
   MicroRNA expression in zebrafish embryonic development
   "Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH"
   "Science (2005) 309:310-311