Stem-loop dre-mir-9-6

Accession

MI0001885

Description

Danio rerio dre-mir-9-6 precursor miRNA

Gene family

MIPF0000014; mir-9

Literature search

22 open access papers mention dre-mir-9-6
(213 sentences)

Sequence

41184 reads, 2151 reads per million, 11 experiments

ggagguaguugcuaUCUUUGGUUAUCUAGCUGUAUGAguguuuaucugccuucaUAAAGCUAGAUAACCGAAAGUagaaauguccucc
(((((..(((.((((.(((((((((((((((.((((((.((......)).)))))).))))))))))))))).)))).)))..)))))

Structure

     ua   g    C               G      u  uu 
ggagg  guu cuaU UUUGGUUAUCUAGCU UAUGAg gu  a
|||||  ||| |||| ||||||||||||||| |||||| ||   
ccucc  uaa gaUG AAGCCAAUAGAUCGA AUacuu cg  u
     ug   a    A               A      c  uc 

Annotation confidence High

Genome context

chr7: 14379544-14379631 [-]

Mature dre-miR-9-5p

• Accession: MIMAT0001769
• Description: Danio rerio dre-miR-9-5p mature miRNA
• Sequence: 15 - UCUUUGGUUAUCUAGCUGUAUGA - 37
• Evidence: experimental ; cloned [1]

Mature dre-miR-9-3p

• Accession: MIMAT0003156
• Description: Danio rerio dre-miR-9-3p mature miRNA
• Sequence: 55 - UAAAGCUAGAUAACCGAAAGU - 75
• Evidence: experimental ; array [2], in-situ [2]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293


2. PubMed ID: 15919954
   MicroRNA expression in zebrafish embryonic development
   "Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH"
   "Science (2005) 309:310-311