Stem-loop sequence dre-mir-10b-2

Accession

MI0001887 (change log)

Description

Danio rerio miR-10b-2 stem-loop

Gene family

MIPF0000033; mir-10

Literature search

16 open access papers mention dre-mir-10b-2
(189 sentences)

Stem-loop

   -gua         a   ac        ac  a       uccaaaa 
5'     gucgucuau ugu  ccuguaga  cg auuugug       c
       ||||||||| |||  ||||||||  || |||||||        
3'     cagcgggua aua  ggacaucu  gc uaaacgc       a
   aaug         c   -a        cu  a       uaaaacu 

Deep sequencing

509174 reads, 2.97e+04 reads per million, 11 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr23: 36130001-36130092 [+]
• Overlapping transcripts:

  sense

  OTTDART00000059220 ; hoxc3a-004; intron 2

  OTTDART00000019709 ; hoxc3a-003; intron 2

  OTTDART00000019708 ; hoxc3a-002; intron 2

  ENSDART00000154825 ; hoxc3a-004; intron 2

  ENSDART00000128533 ; hoxc3a-003; intron 2

  ENSDART00000137507 ; hoxc3a-002; intron 2

  ENSDART00000082472 ; hoxc3a-201; intron 2

  antisense

  OTTDART00000058629 ; si:dkey-81p22.11-002; intron 3

  OTTDART00000059834 ; si:dkey-81p22.11-004; intron 3

  OTTDART00000059835 ; si:dkey-81p22.11-003; intron 4

  OTTDART00000059838 ; si:dkey-81p22.11-007; intron 4

  OTTDART00000019699 ; si:dkey-81p22.11-001; intron 5

  OTTDART00000059833 ; si:dkey-81p22.11-008; intron 5

  OTTDART00000059837 ; si:dkey-81p22.11-006; intron 5

  OTTDART00000059836 ; si:dkey-81p22.11-005; intron 6

  ENSDART00000153206 ; si:dkey-81p22.11-002; intron 3

  ENSDART00000155040 ; si:dkey-81p22.11-004; intron 3

  ENSDART00000156899 ; si:dkey-81p22.11-003; intron 4

  ENSDART00000155063 ; si:dkey-81p22.11-007; intron 4

  ENSDART00000143609 ; si:dkey-81p22.11-001; intron 5

  ENSDART00000155822 ; si:dkey-81p22.11-008; intron 5

  ENSDART00000153852 ; si:dkey-81p22.11-006; intron 5

  ENSDART00000157077 ; si:dkey-81p22.11-005; intron 6

Database links

• EntrezGene:mir10b-2
• EntrezGene:mir10b-2
• RNAcentral:URS000075D672_7955
• miRBase Tracker:MI0001887

Mature sequence dre-miR-10b-5p

• Accession: MIMAT0001268
• Previous IDs: dre-miR-10b
• Sequence: 16 - uacccuguagaaccgaauuugug - 38
• Deep sequencing: 1017976 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000058760A_7955
• Predicted targets:
  • TargetScanFish:dre-miR-10b

Mature sequence dre-miR-10b-2-3p

• Accession: MIMAT0031934
• Sequence: 57 - caaauacgucucuacaggaau - 77
• Deep sequencing: 339 reads, 11 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS000076B60A_7955

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).