Stem-loop dre-mir-10b-2

Accession

MI0001887

Description

Danio rerio dre-mir-10b-2 precursor miRNA

Gene family

MIPF0000033; mir-10

Literature search

16 open access papers mention dre-mir-10b-2
(194 sentences)

Sequence

376688 reads, 23818 reads per million, 11 experiments

guagucgucuauaugUACCCUGUAGAACCGAAUUUGUGuccaaaacaucaaaaucgCAAAUACGUCUCUACAGGAAUacaugggcgacguaa
...(((((((..(((((.((((((((..((.(((((((................))))))).))..))))))))..))))))))))))....

Structure

-gua       au     -C        AC  A       uccaaaa 
    gucgucu  augUA  CCUGUAGA  CG AUUUGUG       c
    |||||||  |||||  ||||||||  || |||||||        
    cagcggg  uacaU  GGACAUCU  GC UAAACgc       a
aaug       --     AA        CU  A       uaaaacu 

Annotation confidence High

Genome context

chr23: 36130001-36130092 [+]

Mature dre-miR-10b-5p

• Accession: MIMAT0001268
• Description: Danio rerio dre-miR-10b-5p mature miRNA
• Sequence: 16 - UACCCUGUAGAACCGAAUUUGUG - 38
• Evidence: experimental ; cloned [1]

Mature dre-miR-10b-2-3p

• Accession: MIMAT0031934
• Description: Danio rerio dre-miR-10b-2-3p mature miRNA
• Sequence: 57 - CAAAUACGUCUCUACAGGAAU - 77
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293