miRBase entry: dre-mir-10c

Stem-loop dre-mir-10c


Accession
MI0001888
Description
Danio rerio dre-mir-10c precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
10 open access papers mention dre-mir-10c
(201 sentences)

Sequence

30337 reads, 1641 reads per million, 11 experiments
ccugucaucuauauaUACCCUGUAGAUCCGGAUUUGUguaaacagacgcacagucacAAAUUCGUAUCUAGGGGAGUAuguaguugauguauagg
(((((((((..((((((((((.(((((.((((((((((................)))))))))).))))).))).)))))))...)))).)))))

Structure
     -    -ua       -   G     C          uaaacag 
ccugu cauc   uauaUAC CCU UAGAU CGGAUUUGUg       a
||||| ||||   ||||||| ||| ||||| ||||||||||        
ggaua guag   auguAUG GGG AUCUA GCUUAAAcac       c
     u    uug       A   G     U          ugacacg 


Annotation confidence Not enough data
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Genome context
chr3: 23720651-23720745 [+]

Database links

Mature dre-miR-10c-5p

Accession MIMAT0001770
Description Danio rerio dre-miR-10c-5p mature miRNA
Sequence 16 - UACCCUGUAGAUCCGGAUUUGU - 37
Evidence experimental
cloned [1]
Database links
Predicted targets

Mature dre-miR-10c-3p

Accession MIMAT0031935
Description Danio rerio dre-miR-10c-3p mature miRNA
Sequence 58 - AAAUUCGUAUCUAGGGGAGUA - 78
Evidence not_experimental
Database links

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293