miRBase entry: dre-mir-10d

Stem-loop dre-mir-10d


Accession
MI0001889
Description
Danio rerio dre-mir-10d precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
10 open access papers mention dre-mir-10d
(173 sentences)

Sequence

4141 reads, 190 reads per million, 11 experiments
uggaagcuuuguuccgucgucuauauaUACCCUGUAGAACCGAAUGUGUGuuuacacagcaaauucaCAGAUUCGGUUUUAGGGGAGUAuauggacgaugcaaaaacgucugcuuuca
(((((((..((((.((((((((((((((.((((.(((((((((((.((((...............)))).))))))))))))))).))))))))))))))....))))...)))))))

Structure
       -uu    ---c              A    G           G    uuuaca 
uggaagc   uguu    cgucgucuauauaU CCCU UAGAACCGAAU UGUG      c
|||||||   ||||    |||||||||||||| |||| ||||||||||| ||||      a
acuuucg   gcaa    guagcagguauAUG GGGG AUUUUGGCUUA ACac      g
       ucu    aaac              A    -           G    uuaaac 


Annotation confidence High
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Genome context
chr6: 10867024-10867141 [+]

Database links

Mature dre-miR-10d-5p

Accession MIMAT0001771
Description Danio rerio dre-miR-10d-5p mature miRNA
Sequence 28 - UACCCUGUAGAACCGAAUGUGUG - 50
Evidence experimental
cloned [1]
Database links
Predicted targets

Mature dre-miR-10d-3p

Accession MIMAT0003394
Description Danio rerio dre-miR-10d-3p mature miRNA
Sequence 68 - CAGAUUCGGUUUUAGGGGAGUA - 89
Evidence experimental
cloned [1]
Database links

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293