Stem-loop sequence dre-mir-15a-2

Accession

MI0001892 (change log)

Description

Danio rerio miR-15a-2 stem-loop

Gene family

MIPF0000006; mir-15

Literature search

11 open access papers mention dre-mir-15a-2
(25 sentences)

Stem-loop

   gc  -   c  u     uga      a        ga          gugau 
5'   cg agg uc cuagg   uggugu gcagcaca  augguuugug     a
     || ||| || |||||   |||||| ||||||||  ||||||||||      
3'   gc ucc ag ggucc   acuacg cgucgugu  uaccggacgu     c
   -c  a   -  -     uua      a        ag          agaga 

Deep sequencing

1916 reads, 164 reads per million, 11 experiments

Confidence

Annotation confidence: not enough data

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Genome context

Coordinates (GRCz11; GCA_000002035.4)	Overlapping transcripts
chr9: 29652511-29652612 [-]	sense OTTDART00000059692 ; si:ch211-261i19.3-002; exon 2 OTTDART00000059691 ; si:ch211-261i19.3-001; exon 3 ENSDART00000156609 ; si:ch211-261i19.3-002; exon 2 ENSDART00000154709 ; si:ch211-261i19.3-001; exon 3 antisense OTTDART00000059690 ; trim13-002; exon 3 ENSDART00000157265 ; trim13-002; exon 3
KZ114910.1: 16563-16664 [-]	sense OTTDART00000059692 ; si:ch211-261i19.3-002; exon 2 OTTDART00000059691 ; si:ch211-261i19.3-001; exon 3 ENSDART00000156609 ; si:ch211-261i19.3-002; exon 2 ENSDART00000154709 ; si:ch211-261i19.3-001; exon 3 antisense OTTDART00000059690 ; trim13-002; exon 3 ENSDART00000157265 ; trim13-002; exon 3

Clustered miRNAs

< 10kb from dre-mir-15a-2

• dre-mir-15a-2: chr9: 29652511-29652612 [-]
• dre-mir-16c: chr9: 29652352-29652487 [-]

Database links

• EntrezGene:mirn15a-2
• RNAcentral:URS000075BA41_7955
• miRBase Tracker:MI0001892

Mature sequence dre-miR-15a-5p

• Accession: MIMAT0001772
• Previous IDs: dre-miR-15a
• Sequence: 25 - uagcagcacagaaugguuugug - 46
• Deep sequencing: 3823 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000075B78E_7955
• Predicted targets:
  • TargetScanFish:dre-miR-15a

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).