miRBase entry: dre-mir-18a

Stem-loop dre-mir-18a

Accession

MI0001900

Description

Danio rerio dre-mir-18a precursor miRNA mir-17

Gene
family?

RF00051; mir-17

Literature search

5 open access papers mention dre-mir-18a
(6 sentences)

Sequence

3320 reads, 182 reads per million, 11 experiments

ggcuuugugcUAAGGUGCAUCUAGUGCAGAUAgugaaguagacuagcaccuacugcccuaagugcuccuucuggcacgagggu
..(((((((((((((.((((.(((.((((.(((((...........)).))))))).))).)))).)))..))))))))))..

Structure

gg          --   U    C   U    A   -  aagu 
  cuuugugcUA  AGG GCAU UAG GCAG UAg ug    a
  ||||||||||  ||| |||| ||| |||| ||| ||    g
  ggagcacggu  ucc cgug auc cguc auc ac    a
ug          cu   u    a   c    -   c  gauc

Annotation confidence High

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Genome context

chr1: 3298006-3298088 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from dre-mir-18a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dre-miR-18a

Accession	MIMAT0001779
Description	Danio rerio dre-miR-18a mature miRNA
Sequence	11 - UAAGGUGCAUCUAGUGCAGAUA - 32
Evidence	experimental cloned [1]
Database links
Predicted targets

References

PubMed ID: 15937218
The developmental miRNA profiles of zebrafish as determined by small RNA cloning
"Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
"Genes Dev (2005) 19:1288-1293