Stem-loop dre-mir-19b

Accession

MI0001904

Description

Danio rerio dre-mir-19b precursor miRNA

Gene family

MIPF0000011; mir-19

Literature search

5 open access papers mention dre-mir-19b
(101 sentences)

Sequence

20130 reads, 1441 reads per million, 11 experiments

gcuggacccccggucAGUUUUGCUGGUUUGCAUUCAGcuuuuaagacugugcgcUGUGCAAAUCCAUGCAAAACUGAuuguggcagc
((((...((.(((((((((((((((((((((((...((............))...))))))).))).))))))))))))).))))))

Structure

    gac  c             -   -       UCA  uuuua 
gcug   cc cggucAGUUUUGC UGG UUUGCAU   Gc     a
||||   || ||||||||||||| ||| |||||||   ||      
cgac   gg guuAGUCAAAACG ACC AAACGUG   cg     g
    ---  u             U   U       Ucg  uguca 

Annotation confidence High

Genome context

chr1: 3297484-3297570 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from dre-mir-19b

Mature dre-miR-19b-5p

• Accession: MIMAT0003399
• Description: Danio rerio dre-miR-19b-5p mature miRNA
• Sequence: 16 - AGUUUUGCUGGUUUGCAUUCAG - 37
• Evidence: experimental ; cloned [1]

Mature dre-miR-19b-3p

• Accession: MIMAT0001783
• Description: Danio rerio dre-miR-19b-3p mature miRNA
• Sequence: 55 - UGUGCAAAUCCAUGCAAAACUGA - 77
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293