Stem-loop sequence dre-mir-19b

Accession

MI0001904 (change log)

Description

Danio rerio miR-19b stem-loop

Gene family

MIPF0000011; mir-19

Literature search

5 open access papers mention dre-mir-19b
(96 sentences)

Stem-loop

       gac  c             -   -       uca  uuuua 
5' gcug   cc cggucaguuuugc ugg uuugcau   gc     a
   ||||   || ||||||||||||| ||| |||||||   ||      
3' cgac   gg guuagucaaaacg acc aaacgug   cg     g
       ---  u             u   u       ucg  uguca 

Deep sequencing

58204 reads, 2.72e+03 reads per million, 11 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr1: 3297484-3297570 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dre-mir-19b

• dre-mir-17a-1: chr1: 3298112-3298249 [-]
• dre-mir-18a: chr1: 3298006-3298088 [-]
• dre-mir-19a: chr1: 3297848-3297936 [-]
• dre-mir-20a: chr1: 3297603-3297755 [-]
• dre-mir-19b: chr1: 3297484-3297570 [-]
• dre-mir-92a-1: chr1: 3297367-3297451 [-]

Database links

• EntrezGene:mir19b
• EntrezGene:mir19b
• RNAcentral:URS000075BE20_7955
• miRBase Tracker:MI0001904

Mature sequence dre-miR-19b-5p

• Accession: MIMAT0003399
• Previous IDs: dre-miR-19b*
• Sequence: 16 - aguuuugcugguuugcauucag - 37
• Deep sequencing: 1073 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS0000759BAD_7955

Mature sequence dre-miR-19b-3p

• Accession: MIMAT0001783
• Previous IDs: dre-miR-19b
• Sequence: 55 - ugugcaaauccaugcaaaacuga - 77
• Deep sequencing: 57095 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000013D17D_7955
• Predicted targets:
  • TargetScanFish:dre-miR-19b

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).