Stem-loop sequence dre-mir-19c

Accession

MI0001905 (change log)

Description

Danio rerio miR-19c stem-loop

Gene family

MIPF0000011; mir-19

Literature search

4 open access papers mention dre-mir-19c
(30 sentences)

Stem-loop

   u  aaaag     uuauc  g             -     -   uc    uuuau 
5'  gg     cccug     ug ggugaguuuugca ggauu gca  cggc     u
    ||     |||||     || ||||||||||||| ||||| |||  ||||     a
3'  cc     gggac     gc ucgcucaaaacgu ccuaa cgu  gucg     c
   a  aaaca     ----c  g             a     a   --    uacaa 

Deep sequencing

49158 reads, 2.21e+03 reads per million, 11 experiments

Confidence

Annotation confidence: high

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Genome context

Coordinates (GRCz11; GCA_000002035.4)	Overlapping transcripts
chr14: 31467026-31467130 [-]	intergenic
KZ115452.1: 23130-23234 [-]	intergenic

Clustered miRNAs

< 10kb from dre-mir-19c

• dre-mir-18c: chr14: 31467376-31467460 [-]
• dre-mir-20b: chr14: 31467167-31467260 [-]
• dre-mir-19c: chr14: 31467026-31467130 [-]
• dre-mir-363: chr14: 31466671-31466797 [-]

Database links

• EntrezGene:mir19c
• EntrezGene:mir19c
• RNAcentral:URS000075E605_7955
• miRBase Tracker:MI0001905

Mature sequence dre-miR-19c-5p

• Accession: MIMAT0031940
• Sequence: 26 - aguuuugcaggauugcauccgg - 47
• Deep sequencing: 268 reads, 3 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS000076DDAC_7955

Mature sequence dre-miR-19c-3p

• Accession: MIMAT0001784
• Previous IDs: dre-miR-19c
• Sequence: 64 - ugugcaaauccaugcaaaacucg - 86
• Deep sequencing: 48890 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS0000759CCC_7955
• Predicted targets:
  • TargetScanFish:dre-miR-19c

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).