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miRBase |
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Stem-loop sequence dre-mir-20a |
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Accession | MI0001907 (change log) | |||||||||||||
Description | Danio rerio miR-20a stem-loop | |||||||||||||
Gene family | MIPF0000001; mir-17 | |||||||||||||
Literature search |
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9 open access papers mention dre-mir-20a | |||||||||||||
Stem-loop |
uaaau c uaau g u a uc c -a g g uauuu 5' ucu aaaucu c guu cag uguguu gaguu ag agugcu aagugcuuaua ugcag uag c ||| |||||| | ||| ||| |||||| ||||| || |||||| ||||||||||| ||||| ||| 3' aga uuuaga g uag guc gcguaa uucga uc ucauga uucacgagugu acguc auc u ucguc a --cc g u - -- u ag g - uacug |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence dre-miR-20a-5p |
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Accession | MIMAT0001786 |
Previous IDs | dre-miR-20a |
Sequence |
51 - uaaagugcuuauagugcagguag - 73 |
Deep sequencing | 81124 reads, 11 experiments |
Evidence | experimental; cloned [1] |
Database links |
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Predicted targets |
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Mature sequence dre-miR-20a-3p |
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Accession | MIMAT0003400 |
Previous IDs | dre-miR-20a* |
Sequence |
88 - acugcagugugagcacuugaag - 109 |
Deep sequencing | 5262 reads, 11 experiments |
Evidence | experimental; cloned [1] |
Database links |
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References |
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1 |
PMID:15937218
"The developmental miRNA profiles of zebrafish as determined by small RNA cloning"
Genes Dev. 19:1288-1293(2005).
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