Stem-loop sequence dre-mir-21-1

Accession

MI0001908 (change log)

Description

Danio rerio miR-21-1 stem-loop

Gene family

MIPF0000060; mir-21

Literature search

21 open access papers mention dre-mir-21-1
(174 sentences)

Stem-loop

         gucuuu     c u   uau    cuuu     u               u       g     g   uuac 
5' uuaugu      auugg g gga   aagu    cccag gugucagauagcuua cagacug uguug cug    a
   ||||||      ||||| | |||   ||||    ||||| ||||||||||||||| ||||||| ||||| |||    u
3' aguaua      uagcc c ucu   uuua    ggguu uacagucugucggau gucugac acagc ggc    u
         -aaaau     u u   ---    ---c     u               -       a     -   ccgc 

Deep sequencing

2650077 reads, 1.85e+05 reads per million, 11 experiments

Confidence

Annotation confidence: high

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Genome context

Coordinates (GRCz11; GCA_000002035.4)	Overlapping transcripts
chr10: 28198894-28199041 [-]	intergenic
KZ115325.1: 323135-323282 [-]	intergenic

Database links

• EntrezGene:mir21-1
• EntrezGene:mir21-1
• RNAcentral:URS000075DA2B_7955
• miRBase Tracker:MI0001908

Mature sequence dre-miR-21

• Accession: MIMAT0001787
• Sequence: 49 - uagcuuaucagacugguguuggc - 71
• Deep sequencing: 5286827 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS00001844D3_7955
• Predicted targets:
  • TargetScanFish:dre-miR-21

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).