Stem-loop sequence dre-mir-23a-1

Accession

MI0001913 (change log)

Description

Danio rerio miR-23a-1 stem-loop

Gene family

MIPF0000027; mir-23

Stem-loop

         g    - a  --          cc       gguggauaaa  g 
5' gcugug cggg g gg  guuccuggca  gugauuu          ca a
   |||||| |||| | ||  ||||||||||  |||||||          ||  
3' uggcac gucc c cc  uagggaccgu  cacuaaa          gu a
         -    u a  uu          ua       ---------a  a 

Confidence

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Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr22: 5293213-5293301 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dre-mir-23a-1

• dre-mir-23a-1: chr22: 5293213-5293301 [+]
• dre-mir-27e: chr22: 5299951-5300056 [+]

Database links

• EntrezGene:mir23a-1
• EntrezGene:mir23a-1
• RNAcentral:URS000075D56C_7955
• miRBase Tracker:MI0001913

Mature sequence dre-miR-23a-3p

• Accession: MIMAT0001790
• Previous IDs: dre-miR-23a
• Sequence: 56 - aucacauugccagggauuucca - 77
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS0000391DB6_7955
• Predicted targets:
  • TargetScanFish:dre-miR-23a

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).