Stem-loop sequence dre-mir-23a-1

AccessionMI0001913
DescriptionDanio rerio miR-23a-1 stem-loop
Gene family MIPF0000027; mir-23
Stem-loop 
         g    - a  --          cc       gguggauaaa  g 
5' gcugug cggg g gg  guuccuggca  gugauuu          ca a
   |||||| |||| | ||  ||||||||||  |||||||          ||  
3' uggcac gucc c cc  uagggaccgu  cacuaaa          gu a
         -    u a  uu          ua       ---------a  a
Get sequence
Deep sequencing
433 reads, 274 reads per million, 4 experiments
Confidence
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Genome context
Coordinates (Zv9) Overlapping transcripts
22: 4997592-4997680 [+]
intergenic
Clustered miRNAs
< 10kb from dre-mir-23a-1
dre-mir-23a-122: 4997592-4997680 [+]
dre-mir-27e22: 5004330-5004435 [+]
Database links

Mature sequence dre-miR-23a-3p

Accession MIMAT0001790
Previous IDsdre-miR-23a
Sequence

56 -  

aucacauugccagggauuucca

 - 77

Get sequence
Deep sequencing11884 reads, 4 experiments
Evidence experimental; cloned [1]

References

1
PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).