Stem-loop sequence dre-mir-23a-1

Accession

MI0001913 (change log)

Description

Danio rerio miR-23a-1 stem-loop

Gene family

MIPF0000027; mir-23

Literature search

11 open access papers mention dre-mir-23a-1
(208 sentences)

Stem-loop

         g    - a  --          cc       gguggauaaa  g 
5' gcugug cggg g gg  guuccuggca  gugauuu          ca a
   |||||| |||| | ||  ||||||||||  |||||||          ||  
3' uggcac gucc c cc  uagggaccgu  cacuaaa          gu a
         -    u a  uu          ua       ---------a  a 

Deep sequencing

33271 reads, 3.85e+03 reads per million, 11 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr22: 5293213-5293301 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dre-mir-23a-1

• dre-mir-23a-1: chr22: 5293213-5293301 [+]
• dre-mir-27e: chr22: 5299951-5300056 [+]

Database links

• EntrezGene:mir23a-1
• EntrezGene:mir23a-1
• RNAcentral:URS000075D56C_7955
• miRBase Tracker:MI0001913

Mature sequence dre-miR-23a-3p

• Accession: MIMAT0001790
• Previous IDs: dre-miR-23a
• Sequence: 56 - aucacauugccagggauuucca - 77
• Deep sequencing: 95168 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS0000391DB6_7955
• Predicted targets:
  • TargetScanFish:dre-miR-23a

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).