Stem-loop sequence dre-mir-24-3

Accession

MI0001920 (change log)

Description

Danio rerio miR-24-3 stem-loop

Gene family

MIPF0000041; mir-24

Literature search

5 open access papers mention dre-mir-24-3
(78 sentences)

Stem-loop

         -   g   --caua  a   aua a    g ug c    c  g   a         uua    acu  g 
5' gcugaa cgg agu      ug gag   g ugga c  g cucc gu ccu cugagcuga   cagu   gu c
   |||||| ||| |||      || |||   | |||| |  | |||| || ||| |||||||||   ||||   ||  
3' cgacuu guc uca      ac cuc   c accu g  c gagg ca gga gacuugacu   guca   ca a
         c   g   caaacc  -   aaa -    - gu u    a  a   c         -cg    ---  a 

Deep sequencing

22199 reads, 1.14e+03 reads per million, 11 experiments

Confidence

Annotation confidence: high

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Genome context

Coordinates (GRCz11; GCA_000002035.4)	Overlapping transcripts
chr8: 30162492-30162633 [-]	sense OTTDART00000035785 ; zgc:162939-004; intron 5 OTTDART00000035782 ; zgc:162939-002; intron 6 OTTDART00000035783 ; zgc:162939-001; intron 15 ENSDART00000139864 ; C8H9orf3-004; intron 5 ENSDART00000143809 ; C8H9orf3-001; intron 6 ENSDART00000111358 ; C8H9orf3-002; intron 15
KZ115267.1: 347402-347543 [-]	sense OTTDART00000035785 ; zgc:162939-004; intron 5 OTTDART00000035782 ; zgc:162939-002; intron 6 OTTDART00000035783 ; zgc:162939-001; intron 15 ENSDART00000139864 ; C8H9orf3-004; intron 5 ENSDART00000143809 ; C8H9orf3-001; intron 6 ENSDART00000111358 ; C8H9orf3-002; intron 15

Clustered miRNAs

< 10kb from dre-mir-24-3

• dre-mir-23b-2: chr8: 30167625-30167708 [-]
• dre-mir-27b: chr8: 30167435-30167525 [-]
• dre-mir-24-3: chr8: 30162492-30162633 [-]

Database links

• EntrezGene:mir24-3
• EntrezGene:mir24-3
• RNAcentral:URS000075A21E_7955
• miRBase Tracker:MI0001920

Mature sequence dre-miR-24

• Accession: MIMAT0001792
• Sequence: 80 - uggcucaguucagcaggaacag - 101
• Deep sequencing: 85524 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000059273E_7955
• Predicted targets:
  • TargetScanFish:dre-miR-24

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).