Stem-loop sequence dre-mir-26a-2

Accession

MI0001925 (change log)

Previous IDs

dre-mir-26a-3

Description

Danio rerio miR-26a-2 stem-loop

Gene family

MIPF0000043; mir-26

Literature search

10 open access papers mention dre-mir-26a-2
(119 sentences)

Stem-loop

   guguggacu     g   -    -----       uc   u  u         ca         gu ug 
5'          ugagu cug gaag     ugguugu  ccu gu caaguaauc  ggauaggcu  c  u
            ||||| ||| ||||     |||||||  ||| || |||||||||  |||||||||  |   
3'          acuca ggu cuuc     gccgacg  gga ca guucauuag  cuuauccgg  g  c
   ------cgu     a   a    ccguu       gu   u  c         ua         ag uc 

Deep sequencing

274783 reads, 1.65e+04 reads per million, 11 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr2: 21375467-21375594 [+]
• Overlapping transcripts:

  sense

  ENSDART00000089433 ; ctdsplb-201; intron 4

Database links

• EntrezGene:mir26a-2
• RNAcentral:URS000075E72F_7955
• miRBase Tracker:MI0001925

Mature sequence dre-miR-26a-5p

• Accession: MIMAT0001794
• Previous IDs: dre-miR-26a
• Sequence: 37 - uucaaguaauccaggauaggcu - 58
• Deep sequencing: 827647 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000019B0F7_7955
• Predicted targets:
  • TargetScanFish:dre-miR-26a

Mature sequence dre-miR-26a-2-3p

• Accession: MIMAT0031948
• Sequence: 73 - ccuauucaugauuacuugcacu - 94
• Deep sequencing: 78 reads, 8 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS000076D05C_7955

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).