Stem-loop sequence dre-mir-27b

Accession

MI0001929 (change log)

Description

Danio rerio miR-27b stem-loop

Gene family

MIPF0000036; mir-27

Literature search

9 open access papers mention dre-mir-27b
(112 sentences)

Stem-loop

           ag                   auug        u  uu 
5' ucuuuucu  caggugcagagcuuagcug    gugaacag ga  g
   ||||||||  |||||||||||||||||||    |||||||| ||   
3' aggagagg  gucuacgucuugaaucggu    cacuuguu cu  a
           -a                   --ga        u  ca 

Deep sequencing

208758 reads, 1.27e+04 reads per million, 11 experiments

Confidence

Annotation confidence: high

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Genome context

Coordinates (GRCz11; GCA_000002035.4)	Overlapping transcripts
chr8: 30167435-30167525 [-]	sense OTTDART00000035785 ; zgc:162939-004; intron 5 OTTDART00000035782 ; zgc:162939-002; intron 6 OTTDART00000035783 ; zgc:162939-001; intron 15 ENSDART00000139864 ; C8H9orf3-004; intron 5 ENSDART00000143809 ; C8H9orf3-001; intron 6 ENSDART00000111358 ; C8H9orf3-002; intron 15
KZ115267.1: 352345-352435 [-]	sense OTTDART00000035785 ; zgc:162939-004; intron 5 OTTDART00000035782 ; zgc:162939-002; intron 6 OTTDART00000035783 ; zgc:162939-001; intron 15 ENSDART00000139864 ; C8H9orf3-004; intron 5 ENSDART00000143809 ; C8H9orf3-001; intron 6 ENSDART00000111358 ; C8H9orf3-002; intron 15

Clustered miRNAs

< 10kb from dre-mir-27b

• dre-mir-23b-2: chr8: 30167625-30167708 [-]
• dre-mir-27b: chr8: 30167435-30167525 [-]
• dre-mir-24-3: chr8: 30162492-30162633 [-]

Database links

• EntrezGene:mir27b
• EntrezGene:mir27b
• RNAcentral:URS000075B7A2_7955
• miRBase Tracker:MI0001929

Mature sequence dre-miR-27b-5p

• Accession: MIMAT0031950
• Sequence: 18 - agagcuuagcugauuggugaaca - 40
• Deep sequencing: 3416 reads, 11 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS000075EA7B_7955

Mature sequence dre-miR-27b-3p

• Accession: MIMAT0001797
• Previous IDs: dre-miR-27b
• Sequence: 57 - uucacaguggcuaaguucugca - 78
• Deep sequencing: 205340 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000044B6CD_7955
• Predicted targets:
  • TargetScanFish:dre-miR-27b

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).