Stem-loop sequence dre-mir-27c

Accession

MI0001930 (change log)

Previous IDs

dre-mir-27c

Description

Danio rerio miR-27c stem-loop

Gene family

MIPF0000036; mir-27

Literature search

7 open access papers mention dre-mir-27c
(19 sentences)

Stem-loop

       gugu    u            c   u       a  cauc 
5' gguu    ggug caggacuuaacc acu gugaaca ug    g
   ||||    |||| |||||||||||| ||| ||||||| ||     
3' ccag    ccgc gucuugaauugg uga cacuugu ac    a
       aucc    c            -   -       a  uuca 

Deep sequencing

185501 reads, 1.15e+04 reads per million, 11 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr3: 13406451-13406538 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dre-mir-27c

• dre-mir-23a-2: chr3: 13406226-13406323 [+]
• dre-mir-27c: chr3: 13406451-13406538 [+]
• dre-mir-24-2: chr3: 13412979-13413060 [+]

Database links

• EntrezGene:mir27c
• EntrezGene:mir27c
• RNAcentral:URS000075D3F6_7955
• miRBase Tracker:MI0001930

Mature sequence dre-miR-27c-5p

• Accession: MIMAT0003401
• Previous IDs: dre-miR-27c*
• Sequence: 19 - cuuaacccacuugugaacaaug - 40
• Deep sequencing: 7184 reads, 9 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000075BEEA_7955

Mature sequence dre-miR-27c-3p

• Accession: MIMAT0001798
• Previous IDs: dre-miR-27c
• Sequence: 56 - uucacagugguuaaguucugc - 76
• Deep sequencing: 178212 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000075EC9F_7955
• Predicted targets:
  • TargetScanFish:dre-miR-27c

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).