Stem-loop sequence dre-mir-27c

AccessionMI0001930 (change log)
Previous IDsdre-mir-27c
DescriptionDanio rerio miR-27c stem-loop
Gene family MIPF0000036; mir-27
Community annotation

This text is a summary paragraph taken from the Wikipedia entry entitled miR-27. miRBase and Rfam are facilitating community annotation of microRNA families and entries in Wikipedia. Read more ...

miR-27 is a family of microRNA precursors found in animals, including humans. MicroRNAs are typically transcribed as ~70 nucleotide precursors and subsequently processed by the Dicer enzyme to give a ~22 nucleotide product. The excised region or, mature product, of the miR-27 precursor is the microRNA mir-27. Herpesvirus saimiri expresses several non-coding RNAs (HSURs) which have been found to significantly reduce the level of mir-27 in a host cell. It has been proposed that miR-27 operates together with miR-23 and mir-24 in a co-operative cluster.

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5' gguu    ggug caggacuuaacc acu gugaaca ug    g
   ||||    |||| |||||||||||| ||| ||||||| ||     
3' ccag    ccgc gucuugaauugg uga cacuugu ac    a
       aucc    c            -   -       a  uuca 
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Confidence Annotation confidence: high
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Genome context
Coordinates (GRCz11; GCA_000002035.4) Overlapping transcripts
chr3: 13406451-13406538 [+]
Clustered miRNAs
< 10kb from dre-mir-27c
dre-mir-23a-2chr3: 13406226-13406323 [+]
dre-mir-27cchr3: 13406451-13406538 [+]
dre-mir-24-2chr3: 13412979-13413060 [+]
Database links

Mature sequence dre-miR-27c-5p

Accession MIMAT0003401
Previous IDsdre-miR-27c*

19 - 


 - 40

Get sequence
Evidence experimental; cloned [1]
Database links

Mature sequence dre-miR-27c-3p

Accession MIMAT0001798
Previous IDsdre-miR-27c

56 - 


 - 76

Get sequence
Evidence experimental; cloned [1]
Database links
Predicted targets


PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).