Stem-loop sequence dre-mir-27d

Accession

MI0001931 (change log)

Description

Danio rerio miR-27d stem-loop

Gene family

MIPF0000036; mir-27

Literature search

7 open access papers mention dre-mir-27d
(20 sentences)

Stem-loop

   u   gag      c            auug       --u    g 
5'  ucu   cgggug agagcuuggcug    gugaacg   gcau g
    |||   |||||| ||||||||||||    |||||||   |||| c
3'  aga   gcccac ucuugaaucggu    cacuugu   ugug u
   a   aaa      u            --ga       uuu    u 

Deep sequencing

177854 reads, 1.09e+04 reads per million, 11 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr10: 15954727-15954815 [+]
• Overlapping transcripts:

  antisense

  OTTDART00000043259 ; si:dkey-3h23.2-002; intron 2

  OTTDART00000043258 ; si:dkey-3h23.2-001; intron 3

  ENSDART00000142357 ; si:dkey-3h23.2-002; intron 2

  ENSDART00000144692 ; si:dkey-3h23.2-001; intron 3

Clustered miRNAs

< 10kb from dre-mir-27d

• dre-mir-23b: chr10: 15954579-15954659 [+]
• dre-mir-27d: chr10: 15954727-15954815 [+]
• dre-mir-24-1: chr10: 15960835-15960914 [+]

Database links

• EntrezGene:mir27d
• EntrezGene:mir27d
• RNAcentral:URS000075D27F_7955
• miRBase Tracker:MI0001931

Mature sequence dre-miR-27d

• Accession: MIMAT0001799
• Sequence: 57 - uucacaguggcuaaguucuuca - 78
• Deep sequencing: 174845 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000075EE8A_7955
• Predicted targets:
  • TargetScanFish:dre-miR-27d

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).