Stem-loop sequence dre-mir-27e

Accession

MI0001932 (change log)

Description

Danio rerio miR-27e stem-loop

Gene family

MIPF0000036; mir-27

Literature search

6 open access papers mention dre-mir-27e
(18 sentences)

Stem-loop

         --ac      ac     a           aucg       u ga  cc 
5' gucauc    ucgcuc  ggcgc gagcuuagcua    gugagca u  uc  u
   ||||||    ||||||  ||||| |||||||||||    ||||||| |  ||   
3' caguag    agugag  cugug cuugaaucggu    cacuugu a  ag  u
         ggca      gu     a           --ga       c aa  aa 

Deep sequencing

134193 reads, 8.25e+03 reads per million, 11 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr22: 5299951-5300056 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dre-mir-27e

• dre-mir-23a-1: chr22: 5293213-5293301 [+]
• dre-mir-27e: chr22: 5299951-5300056 [+]
• dre-mir-24-4: chr22: 5307485-5307574 [+]

Database links

• EntrezGene:mirn27e
• RNAcentral:URS000075C1AB_7955
• miRBase Tracker:MI0001932

Mature sequence dre-miR-27e

• Accession: MIMAT0001800
• Sequence: 65 - uucacaguggcuaaguucagug - 86
• Deep sequencing: 134096 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000075CC02_7955
• Predicted targets:
  • TargetScanFish:dre-miR-27e

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).