miRBase entry: dre-mir-29b-2

Stem-loop dre-mir-29b-2

Accession

MI0001934

Description

Danio rerio dre-mir-29b-2 precursor miRNA

Gene family

MIPF0000009; mir-29

Literature search

13 open access papers mention dre-mir-29b-2
(156 sentences)

Sequence

496 reads, 75 reads per million, 11 experiments

ucuuccuccagaugcugguuucacauggugguuuagauguguucuaccaaagucUAGCACCAUUUGAAAUCAGUGUucuuggggaggg
.(((((((.((((((((((((((.((((((..((((((.((......))..)))))))))))).))))))))))).))).))))))).

Structure

u       c   -           c      gu      -g  uu 
 cuuccuc aga ugcugguuuca auggug  uuagau  ug  c
 ||||||| ||| ||||||||||| ||||||  ||||||  ||   
 ggagggg ucu GUGACUAAAGU UACCAC  GAUcug  ac  u
g       u   U           U      --      aa  ca

Annotation confidence High

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Genome context

chr4: 11608196-11608283 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-29b-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dre-miR-29b

Accession	MIMAT0001801
Description	Danio rerio dre-miR-29b mature miRNA
Sequence	55 - UAGCACCAUUUGAAAUCAGUGU - 76
Evidence	experimental cloned [1]
Database links
Predicted targets

References

PubMed ID: 15937218
The developmental miRNA profiles of zebrafish as determined by small RNA cloning
"Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
"Genes Dev (2005) 19:1288-1293