miRBase entry: dre-mir-29a

Stem-loop dre-mir-29a


Accession
MI0001938
Description
Danio rerio dre-mir-29a precursor miRNA
Gene family
MIPF0000009; mir-29

Literature search
16 open access papers mention dre-mir-29a
(120 sentences)

Sequence

1606 reads, 500158 reads per million, 12 experiments
ugaagacccucaucucucucucucucuccccaccaaacgaugacugauuuccuuuggugcuuagagucccaucugucaucUAGCACCAUUUGAAAUCGGUUAuaaugacuggggaucaauucuuca
((((((....................((((((.......((((((((((((...(((((((.(((.............))))))))))...))))))))))))......)))))).....))))))

Structure
      cccucaucucucucucucuc      ccaaacg            cuu       u   guccc 
ugaaga                    ucccca       augacugauuuc   uggugcu aga     a
||||||                    ||||||       ||||||||||||   ||||||| |||     u
acuucu                    aggggu       uAUUGGCUAAAG   ACCACGA Ucu     c
      ---------------uaacu      -caguaa            UUU       -   acugu 


Annotation confidence High
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Genome context
chr4: 11606758-11606883 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from dre-mir-29a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-29a

Accession MIMAT0001802
Description Danio rerio dre-miR-29a mature miRNA
Sequence 81 - UAGCACCAUUUGAAAUCGGUUA - 102
Evidence experimental
cloned [1]
Database links
Predicted targets

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293