Stem-loop dre-mir-30d

Accession

MI0001946

Description

Danio rerio dre-mir-30d precursor miRNA

Gene family

MIPF0000005; mir-30

Literature search

10 open access papers mention dre-mir-30d
(119 sentences)

Sequence

53611 reads, 3086 reads per million, 11 experiments

gugcuguauauggguauaacugguuguucaugccUGUAAACAUCCCCGACUGGAAGcugugcuacgcggaaaacgagcuuucaguuggauguuugcugucaucguccaguucugucgccuuguauuac
.....(((((.((..((((((((.((...(((.(.((((((((((..(((((((((((((............)).))))))))))))))))))))).).))))).)))))..)))..)).)))))...

Structure

gugcu     u  gu   --     u  uuc   c U          CC           -  gcuac 
     guaua gg  aua  acugg ug   aug c GUAAACAUCC  GACUGGAAGcu gu     g
     ||||| ||  |||  ||||| ||   ||| | ||||||||||  ||||||||||| ||      
     uaugu cc  ugu  ugacc gc   uac g cguuuguagg  uugacuuucga ca     c
--cau     u  gc   cu     u  ---   u u          --           g  aaagg 

Annotation confidence High

Genome context

chr16: 25341416-25341543 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-30d

Mature dre-miR-30d

• Accession: MIMAT0001806
• Description: Danio rerio dre-miR-30d mature miRNA
• Sequence: 35 - UGUAAACAUCCCCGACUGGAAG - 56
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293