Stem-loop dre-mir-30e-2

Accession

MI0001950

Description

Danio rerio dre-mir-30e-2 precursor miRNA

Gene family

MIPF0000005; mir-30

Literature search

11 open access papers mention dre-mir-30e-2
(144 sentences)

Sequence

58548 reads, 2501 reads per million, 11 experiments

uacgggcuacUGUAAACAUCCUUGACUGGAAGcuggugcacaugauggagCUUUCAGUCGGAUGUUUGCAGCagccaacu
....((((.((((((((((((..(((((((((((....(....)....))))))))))))))))))))))).))))....

Structure

uacg    a            UU           ggug a 
    ggcu cUGUAAACAUCC  GACUGGAAGcu    c c
    |||| ||||||||||||  |||||||||||    |  
    ccga GACGUUUGUAGG  CUGACUUUCga    g a
ucaa    C            --           ggua u 

Annotation confidence High

Genome context

chr13: 27795130-27795209 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-30e-2

Mature dre-miR-30e-5p

• Accession: MIMAT0001807
• Description: Danio rerio dre-miR-30e-5p mature miRNA
• Sequence: 11 - UGUAAACAUCCUUGACUGGAAG - 32
• Evidence: experimental ; cloned [1]

Mature dre-miR-30e-3p

• Accession: MIMAT0003402
• Description: Danio rerio dre-miR-30e-3p mature miRNA
• Sequence: 51 - CUUUCAGUCGGAUGUUUGCAGC - 72
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293