miRBase entry: dre-mir-30e-2

Stem-loop dre-mir-30e-2

Accession

MI0001950

Description

Danio rerio dre-mir-30e-2 precursor miRNA

Literature search

11 open access papers mention dre-mir-30e-2
(144 sentences)

Sequence

58548 reads, 2449 reads per million, 11 experiments

uacgggcuacUGUAAACAUCCUUGACUGGAAGcuggugcacaugauggagCUUUCAGUCGGAUGUUUGCAGCagccaacu
....((((.((((((((((((..(((((((((((....(....)....))))))))))))))))))))))).))))....

Structure

uacg    a            UU           ggug a 
    ggcu cUGUAAACAUCC  GACUGGAAGcu    c c
    |||| ||||||||||||  |||||||||||    |  
    ccga GACGUUUGUAGG  CUGACUUUCga    g a
ucaa    C            --           ggua u

Annotation confidence High

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Genome context

chr13: 27795130-27795209 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-30e-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dre-miR-30e-5p

Accession	MIMAT0001807
Description	Danio rerio dre-miR-30e-5p mature miRNA
Sequence	11 - UGUAAACAUCCUUGACUGGAAG - 32
Evidence	experimental cloned [1]
Database links
Predicted targets

Mature dre-miR-30e-3p

Accession	MIMAT0003402
Description	Danio rerio dre-miR-30e-3p mature miRNA
Sequence	51 - CUUUCAGUCGGAUGUUUGCAGC - 72
Evidence	experimental cloned [1]
Database links

References

PubMed ID: 15937218
The developmental miRNA profiles of zebrafish as determined by small RNA cloning
"Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
"Genes Dev (2005) 19:1288-1293