miRBase entry: dre-mir-92a-2

Stem-loop dre-mir-92a-2


Accession
MI0001952
Description
Danio rerio dre-mir-92a-2 precursor miRNA
Gene family
MIPF0000013; mir-25

Literature search
10 open access papers mention dre-mir-92a-2
(30 sentences)

Sequence

79944 reads, 4845 reads per million, 11 experiments
acagcaucccuuucuuugcAGGUUGGGAUCGGCCGCAAUGCUcugugcuggaagUAUUGCACUUGUCCCGGCCUGUgaagagcaugggaaauugu
((((..((((.((((((((((((((((((.((..((((((((((.....)).)))))))).)).))))))))))))))))))...))))..))))

Structure
    ca    --u                  C  CC        -  g 
acag  uccc   uucuuugcAGGUUGGGAU GG  GCAAUGCU cu u
||||  ||||   |||||||||||||||||| ||  |||||||| || g
uguu  aggg   gagaagUGUCCGGCCCUG UC  CGUUAUga gg c
    aa    uac                  U  -A        a  u 


Annotation confidence High
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Genome context
chr9: 53436280-53436374 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from dre-mir-92a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-92a-3p

Accession MIMAT0001808
Description Danio rerio dre-miR-92a-3p mature miRNA
Sequence 55 - UAUUGCACUUGUCCCGGCCUGU - 76
Evidence experimental
cloned [1]
Database links
Predicted targets

Mature dre-miR-92a-2-5p

Accession MIMAT0031954
Description Danio rerio dre-miR-92a-2-5p mature miRNA
Sequence 20 - AGGUUGGGAUCGGCCGCAAUGCU - 42
Evidence not_experimental
Database links

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293