Stem-loop dre-mir-92b

Accession

MI0001953

Description

Danio rerio dre-mir-92b precursor miRNA

Gene family

MIPF0000013; mir-25

Literature search

8 open access papers mention dre-mir-92b
(30 sentences)

Sequence

4128 reads, 285 reads per million, 11 experiments

uccuacgggcagggAGGUGUGGGAUGUUGUGCAGUGUUguucaaucucccgccaaUAUUGCACUCGUCCCGGCCUCCcugac
.((....))(((((((((.(((((((..(((((((((((.............))))))))))).))))))))))))))))..

Structure

uccuacggg         G       UU           uucaa 
         cagggAGGU UGGGAUG  GUGCAGUGUUg     u
         ||||||||| |||||||  |||||||||||     c
         gucCCUCCG GCCCUGC  CACGUUAUaac     u
-------ca         -       -U           cgccc 

Annotation confidence High

Genome context

chr16: 42898429-42898510 [+]

Mature dre-miR-92b-3p

• Accession: MIMAT0001809
• Description: Danio rerio dre-miR-92b-3p mature miRNA
• Sequence: 56 - UAUUGCACUCGUCCCGGCCUCC - 77
• Evidence: experimental ; cloned [1]

Mature dre-miR-92b-5p

• Accession: MIMAT0031955
• Description: Danio rerio dre-miR-92b-5p mature miRNA
• Sequence: 15 - AGGUGUGGGAUGUUGUGCAGUGUU - 38
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293