Stem-loop sequence dre-mir-99-1

Accession

MI0001956 (change log)

Description

Danio rerio miR-99-1 stem-loop

Gene family

MIPF0000033; mir-10

Literature search

2 open access papers mention dre-mir-99-1
(4 sentences)

Stem-loop

        -uu u  uua         uc   u      aua gu 
5' gccac   g ca   acccguaga  cga cuugug   a  u
   |||||   | ||   |||||||||  ||| ||||||   |   
3' uggug   c gu   uggguaucu  gcu gaacac   u  u
        ucu u  cuc         ua   c      -gg ag 

Deep sequencing

73387 reads, 5.54e+03 reads per million, 11 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr15: 29795583-29795666 [+]
• Overlapping transcripts:

  sense

  OTTDART00000057551 ; zgc:153372-001; intron 10

  ENSDART00000099958 ; zgc:153372-001; intron 10

Clustered miRNAs

< 10kb from dre-mir-99-1

• dre-mir-99-1: chr15: 29795583-29795666 [+]
• dre-let-7c-1: chr15: 29795823-29795929 [+]
• dre-mir-125c: chr15: 29800968-29801052 [+]

Database links

• EntrezGene:mir99-1
• EntrezGene:mir99-1
• RNAcentral:URS0000759CC8_7955
• miRBase Tracker:MI0001956

Mature sequence dre-miR-99

• Accession: MIMAT0001812
• Sequence: 14 - aacccguagauccgaucuugug - 35
• Deep sequencing: 145856 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS0000157026_7955
• Predicted targets:
  • TargetScanFish:dre-miR-99

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).