Stem-loop sequence dre-mir-99-2

AccessionMI0001957
DescriptionDanio rerio miR-99-2 stem-loop
Gene family MIPF0000033; mir-10
Stem-loop
      uu  c   --a         uc   u    ---  g  u 
5' cac  gu aca   acccguaga  cga cuug   ug cg a
   |||  || |||   |||||||||  ||| ||||   || ||  
3' gug  ca ugu   ugggugucu  gcu gaac   ac gc a
      -u  c   cuc         ua   c    cca  g  u 
Get sequence
Deep sequencing
878 reads, 366 reads per million, 4 experiments
Confidence
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Genome context
Coordinates (Zv9) Overlapping transcripts
10: 39438831-39438910 [-]
intergenic
Clustered miRNAs
< 10kb from dre-mir-99-2
dre-mir-99-210: 39438831-39438910 [-]
dre-let-7c-210: 39436596-39436687 [-]
Database links

Mature sequence dre-miR-99

Accession MIMAT0001812
Sequence

12 - 

aacccguagauccgaucuugug

 - 33

Get sequence
Deep sequencing3360 reads, 4 experiments
Evidence experimental; cloned [1]

References

1
PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).