miRBase entry: dre-mir-99-2

Stem-loop dre-mir-99-2


Accession
MI0001957
Description
Danio rerio dre-mir-99-2 precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
2 open access papers mention dre-mir-99-2
(4 sentences)

Sequence

7801 reads, 795 reads per million, 11 experiments
cacuugucacaAACCCGUAGAUCCGAUCUUGUGgcguaaucggcaacccaagcucgauucugugggucucugucacugug
(((..((.(((.(((((((((..(((.((((((.((....)).))...)))).)))..)))))))))...))).)).)))

Structure
   uu  c   --A         UC   U    ---  g  u 
cac  gu aca   ACCCGUAGA  CGA CUUG   UG cg a
|||  || |||   |||||||||  ||| ||||   || ||  
gug  ca ugu   ugggugucu  gcu gaac   ac gc a
   -u  c   cuc         ua   c    cca  g  u 


Annotation confidence High
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Genome context
chr10: 38074312-38074391 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from dre-mir-99-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-99

Accession MIMAT0001812
Description Danio rerio dre-miR-99 mature miRNA
Sequence 12 - AACCCGUAGAUCCGAUCUUGUG - 33
Evidence experimental
cloned [1]
Database links
Predicted targets

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293