Stem-loop sequence dre-mir-100-1

Accession

MI0001958 (change log)

Description

Danio rerio miR-100-1 stem-loop

Gene family

MIPF0000033; mir-10

Literature search

5 open access papers mention dre-mir-100-1
(9 sentences)

Stem-loop

       agaccu   -   u    c a   cg     c   a      g  ac 
5' gaag      gcc ugc gaca a acc  uagau cga cuugug ug  u
   ||||      ||| ||| |||| | |||  ||||| ||| |||||| ||   
3' cuuc      cgg gug cugu u ugg  aucua guu gaacac ac  g
       ------   u   u    c a   au     u   c      -  cu 

Deep sequencing

82122 reads, 5.92e+03 reads per million, 11 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr15: 21437633-21437728 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dre-mir-100-1

• dre-mir-100-1: chr15: 21437633-21437728 [+]
• dre-let-7a-2: chr15: 21437876-21437959 [+]

Database links

• EntrezGene:mir100-1
• EntrezGene:mir100-1
• RNAcentral:URS000075B001_7955
• miRBase Tracker:MI0001958

Mature sequence dre-miR-100-5p

• Accession: MIMAT0001813
• Previous IDs: dre-miR-100
• Sequence: 24 - aacccguagauccgaacuugug - 45
• Deep sequencing: 163841 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000040D674_7955
• Predicted targets:
  • TargetScanFish:dre-miR-100

Mature sequence dre-miR-100-3p

• Accession: MIMAT0031957
• Sequence: 59 - caagcuuguaucuauagguauc - 80
• Deep sequencing: 202 reads, 8 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS0000774C1A_7955

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).