Stem-loop sequence dre-mir-100-2

Accession

MI0001959 (change log)

Description

Danio rerio miR-100-2 stem-loop

Gene family

MIPF0000033; mir-10

Literature search

5 open access papers mention dre-mir-100-2
(9 sentences)

Stem-loop

   a  u c    a   cg    uc   a      gugu 
5'  gc g caca acc  uaga  cga cuugug    c
    || | |||| |||  ||||  ||| ||||||    u
3'  cg c gugu ugg  aucu  gcu gaacac    c
   g  u u    a   au    gu   c      gugu 

Deep sequencing

83022 reads, 5.98e+03 reads per million, 11 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr5: 29990147-29990221 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dre-mir-100-2

• dre-mir-100-2: chr5: 29990147-29990221 [+]
• dre-let-7a-4: chr5: 29990452-29990544 [+]
• dre-mir-125b-2: chr5: 29998762-29998847 [+]

Database links

• EntrezGene:mir100-2
• EntrezGene:mir100-2
• RNAcentral:URS000075B287_7955
• miRBase Tracker:MI0001959

Mature sequence dre-miR-100-5p

• Accession: MIMAT0001813
• Previous IDs: dre-miR-100
• Sequence: 11 - aacccguagauccgaacuugug - 32
• Deep sequencing: 163841 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000040D674_7955
• Predicted targets:
  • TargetScanFish:dre-miR-100

Mature sequence dre-miR-100-2-3p

• Accession: MIMAT0031958
• Sequence: 46 - caagcucgugucuauagguaug - 67
• Deep sequencing: 1100 reads, 10 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS000076D733_7955

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).