Stem-loop sequence dre-mir-100-2

AccessionMI0001959 (change log)
DescriptionDanio rerio miR-100-2 stem-loop
Gene family MIPF0000033; mir-10
Stem-loop
   a  u c    a   cg    uc   a      gugu 
5'  gc g caca acc  uaga  cga cuugug    c
    || | |||| |||  ||||  ||| ||||||    u
3'  cg c gugu ugg  aucu  gcu gaacac    c
   g  u u    a   au    gu   c      gugu 
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Confidence
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Genome context
Coordinates (GRCz11; GCA_000002035.4) Overlapping transcripts
chr5: 29990147-29990221 [+]
intergenic
Clustered miRNAs
< 10kb from dre-mir-100-2
dre-mir-100-2chr5: 29990147-29990221 [+]
dre-let-7a-4chr5: 29990452-29990544 [+]
dre-mir-125b-2chr5: 29998762-29998847 [+]
Database links

Mature sequence dre-miR-100-5p

Accession MIMAT0001813
Previous IDsdre-miR-100
Sequence

11 - 

aacccguagauccgaacuugug

 - 32

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Evidence experimental; cloned [1]
Database links
Predicted targets

Mature sequence dre-miR-100-2-3p

Accession MIMAT0031958
Sequence

46 - 

caagcucgugucuauagguaug

 - 67

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Evidence not experimental
Database links

References

1
PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).