Stem-loop sequence dre-mir-101b

AccessionMI0001961
DescriptionDanio rerio miR-101b stem-loop
Gene family MIPF0000046; mir-101
Community annotation

This text is a summary paragraph taken from the Wikipedia entry entitled mir-101_microRNA_precursor_family. miRBase and Rfam are facilitating community annotation of microRNA families and entries in Wikipedia. Read more ...

miR-101 microRNA precursor is a small non-coding RNA that regulates gene expression. Expression of miR-101 has been validated in both human (MI0000103, MI0000739) and mouse (MI0000148). This microRNA appears to be specific to the vertebrates and has now been predicted or confirmed in a wide range of vertebrate species (MIPF0000046). The precursor microRNA is a stem-loop structure of about 70 nucleotides in length that is processed by the Dicer enzyme to form the 21-24 nucleotide mature microRNA. In this case the mature sequence is excised from the 3' arm of the hairpin.

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Stem-loop
        u c --uca  -a      c                    cg     g  ug 
5' gcucc c g     ug  auuguc auuuucaguuaucaugguac  gugcu ug  c
   ||||| | |     ||  |||||| ||||||||||||||||||||  ||||| ||  c
3' ugagg g c     ac  uggcag uagaagucaauaguaucaug  cauga ac  u
        u a uacaa  cg      u                    -a     -  ug 
Get sequence
Deep sequencing
58 reads, 21.1 reads per million, 4 experiments
Confidence
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (Zv9) Overlapping transcripts
5: 1946477-1946588 [-]
sense
ENSDART00000055878 ; rcl1-201; intron 8
Database links

Mature sequence dre-miR-101b

Accession MIMAT0001815
Sequence

64 - 

uacaguacuaugauaacugaag

 - 85

Get sequence
Deep sequencing44 reads, 4 experiments
Evidence experimental; cloned [1]

References

1
PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).