Stem-loop sequence dre-mir-103

Accession

MI0001962 (change log)

Description

Danio rerio miR-103 stem-loop

Gene family

MIPF0000024; mir-103

Literature search

3 open access papers mention dre-mir-103
(7 sentences)

Stem-loop

   uu    u     g   --   u  u           c   uggaa 
5'   gccc ggucu uca  gcc cu uacggugcugc uug     u
     |||| ||||| |||  ||| || ||||||||||| |||      
3'   cggg ccaga agu  cgg ga auguuacgacg aac     c
   cc    c     g   au   -  c           -   uaggu 

Deep sequencing

29291 reads, 1.02e+03 reads per million, 11 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr13: 15223296-15223383 [+]
• Overlapping transcripts:

  sense

  OTTDART00000037613 ; pank2-001; intron 5

  ENSDART00000133041 ; pank2-001; intron 5

Database links

• EntrezGene:mir103
• EntrezGene:mir103
• RNAcentral:URS000075C728_7955
• miRBase Tracker:MI0001962

Mature sequence dre-miR-103

• Accession: MIMAT0001816
• Sequence: 53 - agcagcauuguacagggcuauga - 75
• Deep sequencing: 29289 reads, 11 experiments
• Evidence: by similarity; MI0000108
• Database links:
  • RNAcentral:URS0000476BE1_7955
• Predicted targets:
  • TargetScanFish:dre-miR-103

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).